2.000 Å
X-ray
2005-03-11
| Name: | 235aa long hypothetical biotin--[acetyl-CoA-carboxylase] ligase |
|---|---|
| ID: | O57883_PYRHO |
| AC: | O57883 |
| Organism: | Pyrococcus horikoshii |
| Reign: | Archaea |
| TaxID: | 70601 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 43.296 |
|---|---|
| Number of residues: | 35 |
| Including | |
| Standard Amino Acids: | 35 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.162 | 479.250 |
| % Hydrophobic | % Polar |
|---|---|
| 46.48 | 53.52 |
| According to VolSite | |

| HET Code: | ATP |
|---|---|
| Formula: | C10H12N5O13P3 |
| Molecular weight: | 503.149 g/mol |
| DrugBank ID: | DB00171 |
| Buried Surface Area: | 61.82 % |
| Polar Surface area: | 319.88 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 17 |
| H-Bond Donors: | 3 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| -31.2944 | 31.1032 | -32.5066 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1A | N | LEU- 49 | 3.1 | 166.64 | H-Bond (Protein Donor) |
| O1B | NH1 | ARG- 51 | 3.07 | 126.06 | H-Bond (Protein Donor) |
| O2B | CZ | ARG- 51 | 3.06 | 0 | Ionic (Protein Cationic) |
| C3' | CB | ARG- 51 | 3.86 | 0 | Hydrophobic |
| N7 | N | GLU- 54 | 2.85 | 136.42 | H-Bond (Protein Donor) |
| N6 | O | GLU- 54 | 2.9 | 158.36 | H-Bond (Ligand Donor) |
| O1G | NZ | LYS- 100 | 2.7 | 165.79 | H-Bond (Protein Donor) |
| O1G | NZ | LYS- 100 | 2.7 | 0 | Ionic (Protein Cationic) |
| O2G | NZ | LYS- 100 | 3.22 | 0 | Ionic (Protein Cationic) |
| O3G | NZ | LYS- 100 | 3.54 | 0 | Ionic (Protein Cationic) |
| O5' | NZ | LYS- 111 | 2.92 | 157.36 | H-Bond (Protein Donor) |
| C5' | CE | LYS- 111 | 3.4 | 0 | Hydrophobic |
| C4' | CD | LYS- 111 | 4.29 | 0 | Hydrophobic |
| N6 | OD1 | ASN- 131 | 2.78 | 159.57 | H-Bond (Ligand Donor) |
| N1 | ND2 | ASN- 131 | 2.64 | 158.52 | H-Bond (Protein Donor) |