2.000 Å
X-ray
2005-03-11
Name: | 235aa long hypothetical biotin--[acetyl-CoA-carboxylase] ligase |
---|---|
ID: | O57883_PYRHO |
AC: | O57883 |
Organism: | Pyrococcus horikoshii |
Reign: | Archaea |
TaxID: | 70601 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 43.296 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 35 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.162 | 479.250 |
% Hydrophobic | % Polar |
---|---|
46.48 | 53.52 |
According to VolSite |
HET Code: | ATP |
---|---|
Formula: | C10H12N5O13P3 |
Molecular weight: | 503.149 g/mol |
DrugBank ID: | DB00171 |
Buried Surface Area: | 61.82 % |
Polar Surface area: | 319.88 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 17 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-31.2944 | 31.1032 | -32.5066 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1A | N | LEU- 49 | 3.1 | 166.64 | H-Bond (Protein Donor) |
O1B | NH1 | ARG- 51 | 3.07 | 126.06 | H-Bond (Protein Donor) |
O2B | CZ | ARG- 51 | 3.06 | 0 | Ionic (Protein Cationic) |
C3' | CB | ARG- 51 | 3.86 | 0 | Hydrophobic |
N7 | N | GLU- 54 | 2.85 | 136.42 | H-Bond (Protein Donor) |
N6 | O | GLU- 54 | 2.9 | 158.36 | H-Bond (Ligand Donor) |
O1G | NZ | LYS- 100 | 2.7 | 165.79 | H-Bond (Protein Donor) |
O1G | NZ | LYS- 100 | 2.7 | 0 | Ionic (Protein Cationic) |
O2G | NZ | LYS- 100 | 3.22 | 0 | Ionic (Protein Cationic) |
O3G | NZ | LYS- 100 | 3.54 | 0 | Ionic (Protein Cationic) |
O5' | NZ | LYS- 111 | 2.92 | 157.36 | H-Bond (Protein Donor) |
C5' | CE | LYS- 111 | 3.4 | 0 | Hydrophobic |
C4' | CD | LYS- 111 | 4.29 | 0 | Hydrophobic |
N6 | OD1 | ASN- 131 | 2.78 | 159.57 | H-Bond (Ligand Donor) |
N1 | ND2 | ASN- 131 | 2.64 | 158.52 | H-Bond (Protein Donor) |