scPDB - 1wbv entry

Protein Data Bank Entry:

PDB ID : 1wbv

Resolution :2.000 Å

Experimental Method : X-ray

Deposition Date : 2004-11-05

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Mitogen-activated protein kinase 14
ID:	MK14_HUMAN
AC:	Q16539
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	25.851
Number of residues:	29
Including
Standard Amino Acids:	29
Non Standard Amino Acids:	0
Water Molecules:	0
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.573	799.875

% Hydrophobic	% Polar
41.35	58.65
According to VolSite

Ligand :

HET Code:	LI3
Formula:	C19H18FN3O2
Molecular weight:	339.364 g/mol
DrugBank ID:	DB08092
Buried Surface Area:	67.64 %
Polar Surface area:	57.36 Å2

Number of
H-Bond Acceptors:	3
H-Bond Donors:	2
Rings:	4
Aromatic rings:	3
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	0
Rotatable Bonds:	3

Mass center Coordinates

X	Y	Z
6.05216	14.552	35.7538

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
DuAr	NZ	LYS- 53	3.8	157.89	Pi/Cation	false
C19	CB	LYS- 53	4.25	0	Hydrophobic	false
N10	OE2	GLU- 71	3.07	155.72	H-Bond (Ligand Donor)	false
F1	CG	GLU- 71	3.79	0	Hydrophobic	false
F1	CD2	LEU- 74	4.01	0	Hydrophobic	false
C3	CD2	LEU- 74	4.2	0	Hydrophobic	false
C20	CD2	LEU- 75	4	0	Hydrophobic	false
C6	CD1	LEU- 75	3.71	0	Hydrophobic	false
C23	SD	MET- 78	3.99	0	Hydrophobic	false
C25	SD	MET- 78	4.35	0	Hydrophobic	false
C23	CG1	VAL- 83	3.65	0	Hydrophobic	false
C5	CG2	ILE- 84	3.95	0	Hydrophobic	false
C12	CD1	ILE- 84	4.13	0	Hydrophobic	false
C22	CG2	ILE- 84	4.07	0	Hydrophobic	false
C20	CD1	ILE- 84	3.72	0	Hydrophobic	false
C20	CD1	LEU- 104	4.49	0	Hydrophobic	false
C14	CG2	THR- 106	3.97	0	Hydrophobic	false
C23	CG2	ILE- 141	4.26	0	Hydrophobic	false
C25	CD1	ILE- 141	4.1	0	Hydrophobic	false
C25	CG2	ILE- 146	3.77	0	Hydrophobic	false
C23	CG2	ILE- 166	4	0	Hydrophobic	false
O9	N	ASP- 168	2.86	174.89	H-Bond (Protein Donor)	false
C5	CB	ASP- 168	3.58	0	Hydrophobic	false