2.000 Å
X-ray
2004-06-23
Name: | Cytokinin dehydrogenase 1 |
---|---|
ID: | CKX1_MAIZE |
AC: | Q9T0N8 |
Organism: | Zea mays |
Reign: | Eukaryota |
TaxID: | 4577 |
EC Number: | 1.5.99.12 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 15.347 |
---|---|
Number of residues: | 28 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | FAD |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.282 | 462.375 |
% Hydrophobic | % Polar |
---|---|
64.23 | 35.77 |
According to VolSite |
HET Code: | EMU |
---|---|
Formula: | C12H11N5 |
Molecular weight: | 225.249 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 62.83 % |
Polar Surface area: | 66.48 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
71.3976 | 33.9694 | 21.5048 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N10 | OD2 | ASP- 169 | 3.21 | 138.26 | H-Bond (Ligand Donor) |
C13 | CD1 | ILE- 184 | 3.74 | 0 | Hydrophobic |
C9 | CZ3 | TRP- 397 | 3.99 | 0 | Hydrophobic |
C11 | CD1 | ILE- 429 | 4.34 | 0 | Hydrophobic |
C13 | CB | SER- 456 | 3.74 | 0 | Hydrophobic |
C9 | CD1 | LEU- 458 | 3.67 | 0 | Hydrophobic |
C14 | CD1 | LEU- 492 | 3.55 | 0 | Hydrophobic |
C9 | C6 | FAD- 1535 | 3.39 | 0 | Hydrophobic |
N10 | O4 | FAD- 1535 | 3.15 | 125.04 | H-Bond (Ligand Donor) |
N7 | O | HOH- 2282 | 2.83 | 179.95 | H-Bond (Protein Donor) |