2.220 Å
X-ray
1996-03-04
| Name: | Gag-Pol polyprotein |
|---|---|
| ID: | POL_HV1BR |
| AC: | P03367 |
| Organism: | Human immunodeficiency virus type 1 group M subtype B |
| Reign: | Viruses |
| TaxID: | 11686 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 31.099 |
|---|---|
| Number of residues: | 19 |
| Including | |
| Standard Amino Acids: | 19 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.586 | 394.875 |
| % Hydrophobic | % Polar |
|---|---|
| 46.15 | 53.85 |
| According to VolSite | |

| HET Code: | U01 |
|---|---|
| Formula: | C19H16BrO3 |
| Molecular weight: | 372.233 g/mol |
| DrugBank ID: | DB08662 |
| Buried Surface Area: | 31.6 % |
| Polar Surface area: | 49.36 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 0 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| 9.24065 | 16.763 | 13.257 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CD3 | CD1 | LEU- 23 | 4.13 | 0 | Hydrophobic |
| CB3 | CB | ALA- 28 | 3.75 | 0 | Hydrophobic |
| BR | CG2 | VAL- 32 | 4.06 | 0 | Hydrophobic |
| BR | CD1 | ILE- 47 | 4.23 | 0 | Hydrophobic |
| OA2 | N | ILE- 50 | 3.37 | 160.5 | H-Bond (Protein Donor) |
| CG4 | CD1 | ILE- 50 | 3.33 | 0 | Hydrophobic |
| CD1 | CG | PRO- 81 | 4.25 | 0 | Hydrophobic |
| CD1 | CG2 | VAL- 82 | 3.78 | 0 | Hydrophobic |
| CD2 | CG2 | VAL- 82 | 3.89 | 0 | Hydrophobic |
| CB3 | CG2 | ILE- 84 | 4.33 | 0 | Hydrophobic |