2.180 Å
X-ray
2003-11-24
| Name: | Peptide deformylase |
|---|---|
| ID: | Q8I372_PLAF7 |
| AC: | Q8I372 |
| Organism: | Plasmodium falciparum |
| Reign: | Eukaryota |
| TaxID: | 36329 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 34.524 |
|---|---|
| Number of residues: | 22 |
| Including | |
| Standard Amino Acids: | 21 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.734 | 347.625 |
| % Hydrophobic | % Polar |
|---|---|
| 52.43 | 47.57 |
| According to VolSite | |

| HET Code: | BRR |
|---|---|
| Formula: | C8H14NO4 |
| Molecular weight: | 188.201 g/mol |
| DrugBank ID: | DB02625 |
| Buried Surface Area: | 68.41 % |
| Polar Surface area: | 80.67 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 1 |
| Rings: | 0 |
| Aromatic rings: | 0 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 6 |
| X | Y | Z |
|---|---|---|
| 31.3438 | 20.4729 | -21.1362 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O12 | N | ILE- 106 | 2.73 | 162.33 | H-Bond (Protein Donor) |
| C8 | CG2 | ILE- 106 | 3.98 | 0 | Hydrophobic |
| O4 | NE2 | GLN- 112 | 2.83 | 154.12 | H-Bond (Protein Donor) |
| C10 | CG | GLU- 154 | 3.83 | 0 | Hydrophobic |
| C6 | CG | LEU- 157 | 4.43 | 0 | Hydrophobic |
| O4 | N | LEU- 157 | 3.09 | 142.47 | H-Bond (Protein Donor) |
| C9 | CG1 | ILE- 195 | 4.34 | 0 | Hydrophobic |
| C10 | CB | HIS- 198 | 3.88 | 0 | Hydrophobic |