2.180 Å
X-ray
2003-11-24
Name: | Peptide deformylase |
---|---|
ID: | Q8I372_PLAF7 |
AC: | Q8I372 |
Organism: | Plasmodium falciparum |
Reign: | Eukaryota |
TaxID: | 36329 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 34.524 |
---|---|
Number of residues: | 22 |
Including | |
Standard Amino Acids: | 21 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.734 | 347.625 |
% Hydrophobic | % Polar |
---|---|
52.43 | 47.57 |
According to VolSite |
HET Code: | BRR |
---|---|
Formula: | C8H14NO4 |
Molecular weight: | 188.201 g/mol |
DrugBank ID: | DB02625 |
Buried Surface Area: | 68.41 % |
Polar Surface area: | 80.67 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 1 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
31.3438 | 20.4729 | -21.1362 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O12 | N | ILE- 106 | 2.73 | 162.33 | H-Bond (Protein Donor) |
C8 | CG2 | ILE- 106 | 3.98 | 0 | Hydrophobic |
O4 | NE2 | GLN- 112 | 2.83 | 154.12 | H-Bond (Protein Donor) |
C10 | CG | GLU- 154 | 3.83 | 0 | Hydrophobic |
C6 | CG | LEU- 157 | 4.43 | 0 | Hydrophobic |
O4 | N | LEU- 157 | 3.09 | 142.47 | H-Bond (Protein Donor) |
C9 | CG1 | ILE- 195 | 4.34 | 0 | Hydrophobic |
C10 | CB | HIS- 198 | 3.88 | 0 | Hydrophobic |