2.100 Å
X-ray
2003-09-30
Name: | 3-hydroxy-3-methylglutaryl-coenzyme A reductase |
---|---|
ID: | MVAA_PSEMV |
AC: | P13702 |
Organism: | Pseudomonas mevalonii |
Reign: | Bacteria |
TaxID: | 32044 |
EC Number: | 1.1.1.88 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 71 % |
B | 29 % |
B-Factor: | 36.785 |
---|---|
Number of residues: | 26 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 2 |
Cofactors: | COA |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.523 | 583.875 |
% Hydrophobic | % Polar |
---|---|
43.93 | 56.07 |
According to VolSite |
HET Code: | MEV |
---|---|
Formula: | C6H11O4 |
Molecular weight: | 147.149 g/mol |
DrugBank ID: | DB03518 |
Buried Surface Area: | 64.73 % |
Polar Surface area: | 80.59 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
85.332 | 125.627 | 107.953 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3 | CZ | ARG- 261 | 3.54 | 0 | Ionic (Protein Cationic) |
O8 | NZ | LYS- 267 | 2.84 | 163.46 | H-Bond (Protein Donor) |
O8 | ND2 | ASN- 271 | 3.15 | 150.22 | H-Bond (Protein Donor) |
C4 | CB | ALA- 368 | 3.94 | 0 | Hydrophobic |
C6 | CB | ALA- 368 | 4.07 | 0 | Hydrophobic |
C6 | CD1 | ILE- 377 | 3.51 | 0 | Hydrophobic |
C6 | CD1 | ILE- 713 | 4.46 | 0 | Hydrophobic |
C2 | S1P | COA- 1002 | 3.45 | 0 | Hydrophobic |
O4 | O | HOH- 1014 | 2.7 | 179.96 | H-Bond (Protein Donor) |