2.700 Å
X-ray
2003-09-22
| Name: | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|---|
| ID: | DXR_ZYMMO |
| AC: | Q9X5F2 |
| Organism: | Zymomonas mobilis subsp. mobilis |
| Reign: | Bacteria |
| TaxID: | 264203 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 36.830 |
|---|---|
| Number of residues: | 24 |
| Including | |
| Standard Amino Acids: | 24 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.551 | 256.500 |
| % Hydrophobic | % Polar |
|---|---|
| 51.32 | 48.68 |
| According to VolSite | |

| HET Code: | NDP |
|---|---|
| Formula: | C21H26N7O17P3 |
| Molecular weight: | 741.389 g/mol |
| DrugBank ID: | DB02338 |
| Buried Surface Area: | 45.12 % |
| Polar Surface area: | 404.9 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 22 |
| H-Bond Donors: | 5 |
| Rings: | 5 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 13 |
| X | Y | Z |
|---|---|---|
| 31.7233 | 54.0135 | 10.3755 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O3B | O | GLY- 11 | 3.31 | 148.63 | H-Bond (Ligand Donor) |
| C3B | CB | THR- 13 | 4.28 | 0 | Hydrophobic |
| O3B | OG1 | THR- 13 | 2.69 | 134.31 | H-Bond (Protein Donor) |
| O3B | N | THR- 13 | 3.12 | 142.94 | H-Bond (Protein Donor) |
| O2B | N | ASN- 39 | 2.87 | 142.68 | H-Bond (Protein Donor) |
| O2X | N | ASN- 39 | 3.42 | 138.65 | H-Bond (Protein Donor) |
| C2B | CB | ASN- 39 | 4.11 | 0 | Hydrophobic |
| O2X | N | ARG- 40 | 2.73 | 157.33 | H-Bond (Protein Donor) |
| O2X | N | ASN- 41 | 2.52 | 146.39 | H-Bond (Protein Donor) |