2.700 Å
X-ray
2003-09-22
Name: | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
---|---|
ID: | DXR_ZYMMO |
AC: | Q9X5F2 |
Organism: | Zymomonas mobilis subsp. mobilis |
Reign: | Bacteria |
TaxID: | 264203 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 36.830 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.551 | 256.500 |
% Hydrophobic | % Polar |
---|---|
51.32 | 48.68 |
According to VolSite |
HET Code: | NDP |
---|---|
Formula: | C21H26N7O17P3 |
Molecular weight: | 741.389 g/mol |
DrugBank ID: | DB02338 |
Buried Surface Area: | 45.12 % |
Polar Surface area: | 404.9 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 22 |
H-Bond Donors: | 5 |
Rings: | 5 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 13 |
X | Y | Z |
---|---|---|
31.7233 | 54.0135 | 10.3755 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3B | O | GLY- 11 | 3.31 | 148.63 | H-Bond (Ligand Donor) |
C3B | CB | THR- 13 | 4.28 | 0 | Hydrophobic |
O3B | OG1 | THR- 13 | 2.69 | 134.31 | H-Bond (Protein Donor) |
O3B | N | THR- 13 | 3.12 | 142.94 | H-Bond (Protein Donor) |
O2B | N | ASN- 39 | 2.87 | 142.68 | H-Bond (Protein Donor) |
O2X | N | ASN- 39 | 3.42 | 138.65 | H-Bond (Protein Donor) |
C2B | CB | ASN- 39 | 4.11 | 0 | Hydrophobic |
O2X | N | ARG- 40 | 2.73 | 157.33 | H-Bond (Protein Donor) |
O2X | N | ASN- 41 | 2.52 | 146.39 | H-Bond (Protein Donor) |