2.800 Å
X-ray
1999-04-07
Name: | 3-hydroxy-3-methylglutaryl-coenzyme A reductase |
---|---|
ID: | MVAA_PSEMV |
AC: | P13702 |
Organism: | Pseudomonas mevalonii |
Reign: | Bacteria |
TaxID: | 32044 |
EC Number: | 1.1.1.88 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 71 % |
B | 29 % |
B-Factor: | 27.291 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | NAD |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.733 | 445.500 |
% Hydrophobic | % Polar |
---|---|
56.06 | 43.94 |
According to VolSite |
HET Code: | MEV |
---|---|
Formula: | C6H11O4 |
Molecular weight: | 147.149 g/mol |
DrugBank ID: | DB03518 |
Buried Surface Area: | 74.52 % |
Polar Surface area: | 80.59 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 2 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
85.8527 | 125.476 | 108.867 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O8 | OE2 | GLU- 83 | 3.15 | 136.9 | H-Bond (Ligand Donor) |
O3 | NH1 | ARG- 261 | 3.45 | 131.8 | H-Bond (Protein Donor) |
O3 | NH2 | ARG- 261 | 2.81 | 170.79 | H-Bond (Protein Donor) |
O3 | CZ | ARG- 261 | 3.57 | 0 | Ionic (Protein Cationic) |
C4 | CG2 | THR- 264 | 3.57 | 0 | Hydrophobic |
C8 | CD | LYS- 267 | 4.01 | 0 | Hydrophobic |
O8 | NZ | LYS- 267 | 3.2 | 125.96 | H-Bond (Protein Donor) |
C6 | CB | ALA- 368 | 3.38 | 0 | Hydrophobic |
C6 | CD1 | LEU- 372 | 4.16 | 0 | Hydrophobic |
C6 | CD1 | ILE- 377 | 3.92 | 0 | Hydrophobic |
C2 | CD1 | ILE- 713 | 4.36 | 0 | Hydrophobic |
C3 | CG1 | ILE- 713 | 4.4 | 0 | Hydrophobic |
C2 | C4N | NAD- 1001 | 3.77 | 0 | Hydrophobic |