2.400 Å
X-ray
2003-07-18
| Name: | Carbapenam-3-carboxylate synthase |
|---|---|
| ID: | CARA_PECCC |
| AC: | Q9XB61 |
| Organism: | Pectobacterium carotovorum subsp. carotovorum |
| Reign: | Bacteria |
| TaxID: | 555 |
| EC Number: | 6.3.3.6 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| D | 100 % |
| B-Factor: | 27.675 |
|---|---|
| Number of residues: | 19 |
| Including | |
| Standard Amino Acids: | 17 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.384 | 408.375 |
| % Hydrophobic | % Polar |
|---|---|
| 47.93 | 52.07 |
| According to VolSite | |

| HET Code: | SSC |
|---|---|
| Formula: | C7H10NO4 |
| Molecular weight: | 172.159 g/mol |
| DrugBank ID: | DB03215 |
| Buried Surface Area: | 52.86 % |
| Polar Surface area: | 96.87 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 1 |
| Rings: | 1 |
| Aromatic rings: | 0 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| -8.99158 | -5.7435 | 17.6827 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C3S | CD1 | ILE- 323 | 3.56 | 0 | Hydrophobic |
| CSS | CZ | TYR- 345 | 3.61 | 0 | Hydrophobic |
| O1S | N | GLY- 346 | 3.21 | 129.08 | H-Bond (Protein Donor) |
| O2S | N | GLY- 346 | 3.14 | 161.53 | H-Bond (Protein Donor) |
| O1S | N | ASP- 348 | 3.5 | 140.7 | H-Bond (Protein Donor) |
| C5S | CD2 | LEU- 349 | 4.14 | 0 | Hydrophobic |
| C5S | CG2 | ILE- 354 | 4.27 | 0 | Hydrophobic |