3.000 Å
X-ray
2003-06-27
Name: | Transcription termination factor Rho |
---|---|
ID: | RHO_ECOLI |
AC: | P0AG30 |
Organism: | Escherichia coli |
Reign: | Bacteria |
TaxID: | 83333 |
EC Number: | 3.6.4 |
Chain Name: | Percentage of Residues within binding site |
---|---|
E | 17 % |
F | 83 % |
B-Factor: | 53.185 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.138 | 587.250 |
% Hydrophobic | % Polar |
---|---|
51.15 | 48.85 |
According to VolSite |
HET Code: | ANP |
---|---|
Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 42.94 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
48.2843 | -6.19919 | 48.2324 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1B | N | ALA- 182 | 3.41 | 168.1 | H-Bond (Protein Donor) |
O1B | N | GLY- 183 | 3.45 | 131.18 | H-Bond (Protein Donor) |
O3A | N | GLY- 183 | 3.47 | 150.52 | H-Bond (Protein Donor) |
O1B | N | LYS- 184 | 3.15 | 150.57 | H-Bond (Protein Donor) |
O2B | N | THR- 185 | 2.57 | 159.96 | H-Bond (Protein Donor) |
C1' | SD | MET- 186 | 4.33 | 0 | Hydrophobic |
C1' | CZ | PHE- 355 | 3.44 | 0 | Hydrophobic |
DuAr | DuAr | PHE- 355 | 3.94 | 0 | Aromatic Face/Face |
O3G | NH2 | ARG- 366 | 3.02 | 166.31 | H-Bond (Protein Donor) |
O3G | CZ | ARG- 366 | 3.71 | 0 | Ionic (Protein Cationic) |