3.000 Å
X-ray
2003-06-27
| Name: | Transcription termination factor Rho |
|---|---|
| ID: | RHO_ECOLI |
| AC: | P0AG30 |
| Organism: | Escherichia coli |
| Reign: | Bacteria |
| TaxID: | 83333 |
| EC Number: | 3.6.4 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| E | 17 % |
| F | 83 % |
| B-Factor: | 53.185 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 29 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.138 | 587.250 |
| % Hydrophobic | % Polar |
|---|---|
| 51.15 | 48.85 |
| According to VolSite | |

| HET Code: | ANP |
|---|---|
| Formula: | C10H13N6O12P3 |
| Molecular weight: | 502.164 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 42.94 % |
| Polar Surface area: | 322.68 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 16 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 48.2843 | -6.19919 | 48.2324 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O1B | N | ALA- 182 | 3.41 | 168.1 | H-Bond (Protein Donor) |
| O1B | N | GLY- 183 | 3.45 | 131.18 | H-Bond (Protein Donor) |
| O3A | N | GLY- 183 | 3.47 | 150.52 | H-Bond (Protein Donor) |
| O1B | N | LYS- 184 | 3.15 | 150.57 | H-Bond (Protein Donor) |
| O2B | N | THR- 185 | 2.57 | 159.96 | H-Bond (Protein Donor) |
| C1' | SD | MET- 186 | 4.33 | 0 | Hydrophobic |
| C1' | CZ | PHE- 355 | 3.44 | 0 | Hydrophobic |
| DuAr | DuAr | PHE- 355 | 3.94 | 0 | Aromatic Face/Face |
| O3G | NH2 | ARG- 366 | 3.02 | 166.31 | H-Bond (Protein Donor) |
| O3G | CZ | ARG- 366 | 3.71 | 0 | Ionic (Protein Cationic) |