2.900 Å
X-ray
2002-12-13
| Name: | Inosine-5'-monophosphate dehydrogenase 2 |
|---|---|
| ID: | IMDH2_HUMAN |
| AC: | P12268 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 59.499 |
|---|---|
| Number of residues: | 31 |
| Including | |
| Standard Amino Acids: | 30 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.837 | 934.875 |
| % Hydrophobic | % Polar |
|---|---|
| 32.13 | 67.87 |
| According to VolSite | |

| HET Code: | NAD |
|---|---|
| Formula: | C21H26N7O14P2 |
| Molecular weight: | 662.417 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 36.22 % |
| Polar Surface area: | 343.54 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 18 |
| H-Bond Donors: | 6 |
| Rings: | 5 |
| Aromatic rings: | 3 |
| Anionic atoms: | 2 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| 48.4044 | 95.4905 | -47.5052 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N7A | OG1 | THR- 252 | 3.37 | 142.73 | H-Bond (Protein Donor) |
| N6A | O | THR- 252 | 3.28 | 141.4 | H-Bond (Ligand Donor) |
| O2D | OD2 | ASP- 274 | 3.13 | 126.71 | H-Bond (Ligand Donor) |
| O1A | OG | SER- 275 | 2.66 | 159.79 | H-Bond (Protein Donor) |
| O1N | N | SER- 276 | 2.78 | 150.95 | H-Bond (Protein Donor) |
| O1N | OG | SER- 276 | 2.94 | 134.07 | H-Bond (Protein Donor) |
| O2N | OG | SER- 276 | 2.72 | 146.81 | H-Bond (Protein Donor) |
| C4N | CB | SER- 276 | 3.83 | 0 | Hydrophobic |
| C2B | CE2 | PHE- 282 | 3.43 | 0 | Hydrophobic |
| O7N | NH1 | ARG- 322 | 3.25 | 124.98 | H-Bond (Protein Donor) |