2.900 Å
X-ray
2002-12-13
Name: | Inosine-5'-monophosphate dehydrogenase 2 |
---|---|
ID: | IMDH2_HUMAN |
AC: | P12268 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 59.499 |
---|---|
Number of residues: | 31 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.837 | 934.875 |
% Hydrophobic | % Polar |
---|---|
32.13 | 67.87 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 36.22 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
48.4044 | 95.4905 | -47.5052 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N7A | OG1 | THR- 252 | 3.37 | 142.73 | H-Bond (Protein Donor) |
N6A | O | THR- 252 | 3.28 | 141.4 | H-Bond (Ligand Donor) |
O2D | OD2 | ASP- 274 | 3.13 | 126.71 | H-Bond (Ligand Donor) |
O1A | OG | SER- 275 | 2.66 | 159.79 | H-Bond (Protein Donor) |
O1N | N | SER- 276 | 2.78 | 150.95 | H-Bond (Protein Donor) |
O1N | OG | SER- 276 | 2.94 | 134.07 | H-Bond (Protein Donor) |
O2N | OG | SER- 276 | 2.72 | 146.81 | H-Bond (Protein Donor) |
C4N | CB | SER- 276 | 3.83 | 0 | Hydrophobic |
C2B | CE2 | PHE- 282 | 3.43 | 0 | Hydrophobic |
O7N | NH1 | ARG- 322 | 3.25 | 124.98 | H-Bond (Protein Donor) |