2.400 Å
X-ray
2002-08-28
Name: | Nitric oxide synthase oxygenase |
---|---|
ID: | NOSO_STAAU |
AC: | P0A004 |
Organism: | Staphylococcus aureus |
Reign: | Bacteria |
TaxID: | 1280 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 55 % |
B | 45 % |
B-Factor: | 34.345 |
---|---|
Number of residues: | 23 |
Including | |
Standard Amino Acids: | 18 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 3 |
Cofactors: | NAD |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.028 | 1336.500 |
% Hydrophobic | % Polar |
---|---|
46.21 | 53.79 |
According to VolSite |
HET Code: | NAD |
---|---|
Formula: | C21H26N7O14P2 |
Molecular weight: | 662.417 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 47.28 % |
Polar Surface area: | 343.54 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 18 |
H-Bond Donors: | 6 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 3 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
23.9517 | 93.7278 | 37.893 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O1A | NZ | LYS- 313 | 3.92 | 0 | Ionic (Protein Cationic) |
O5B | NZ | LYS- 313 | 2.94 | 0 | Ionic (Protein Cationic) |
O1N | NZ | LYS- 313 | 3.54 | 0 | Ionic (Protein Cationic) |
O5B | NZ | LYS- 313 | 2.94 | 148.33 | H-Bond (Protein Donor) |
C5D | CD2 | TRP- 314 | 3.58 | 0 | Hydrophobic |
C2D | CZ2 | TRP- 314 | 4.02 | 0 | Hydrophobic |
C3D | CE2 | TRP- 314 | 3.7 | 0 | Hydrophobic |
O1N | OG | SER- 315 | 3.12 | 160.12 | H-Bond (Protein Donor) |
C5D | CB | SER- 315 | 3.7 | 0 | Hydrophobic |
O2D | O | TYR- 329 | 3.1 | 144 | H-Bond (Ligand Donor) |
O3 | O | HOH- 1200 | 3.36 | 179.97 | H-Bond (Protein Donor) |