2.160 Å
X-ray
2002-08-04
Name: | Carboxyethyl-arginine beta-lactam-synthase |
---|---|
ID: | BLS_STRCL |
AC: | P0DJQ7 |
Organism: | Streptomyces clavuligerus |
Reign: | Bacteria |
TaxID: | 1901 |
EC Number: | 6.3.3.4 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 29.806 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 3 |
Water Molecules: | 1 |
Cofactors: | AMP |
Metals: | MG MG |
Ligandability | Volume (Å3) |
---|---|
0.662 | 502.875 |
% Hydrophobic | % Polar |
---|---|
50.34 | 49.66 |
According to VolSite |
HET Code: | PCX |
---|---|
Formula: | C9H16N4O3 |
Molecular weight: | 228.248 g/mol |
DrugBank ID: | DB02475 |
Buried Surface Area: | 67.82 % |
Polar Surface area: | 124.07 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 3 |
Rings: | 1 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
-7.3092 | 88.6233 | 60.5947 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5 | CD1 | ILE- 323 | 4.18 | 0 | Hydrophobic |
C2 | CD1 | TYR- 326 | 4.2 | 0 | Hydrophobic |
C4 | CE1 | TYR- 326 | 3.62 | 0 | Hydrophobic |
C2 | CZ | TYR- 348 | 3.64 | 0 | Hydrophobic |
O2 | N | GLY- 349 | 3.05 | 162.68 | H-Bond (Protein Donor) |
C5 | CD1 | ILE- 352 | 3.76 | 0 | Hydrophobic |
N3 | OE2 | GLU- 382 | 2.91 | 140.7 | H-Bond (Ligand Donor) |
O4 | NZ | LYS- 443 | 2.99 | 135.52 | H-Bond (Protein Donor) |