scPDB - 1maw entry

Protein Data Bank Entry:

PDB ID : 1maw

Resolution :3.000 Å

Experimental Method : X-ray

Deposition Date : 2002-08-02

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Tryptophan--tRNA ligase
ID:	SYW_GEOSE
AC:	P00953
Organism:	Geobacillus stearothermophilus
Reign:	Bacteria
TaxID:	1422
EC Number:	6.1.1.2

Chains:

Chain Name:	Percentage of Residues within binding site
D	100 %

Ligand binding site composition:

B-Factor:	48.169
Number of residues:	34
Including
Standard Amino Acids:	34
Non Standard Amino Acids:	0
Water Molecules:	0
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.528	553.500

% Hydrophobic	% Polar
46.95	53.05
According to VolSite

Ligand :

HET Code:	ATP
Formula:	C10H12N5O13P3
Molecular weight:	503.149 g/mol
DrugBank ID:	DB00171
Buried Surface Area:	54.24 %
Polar Surface area:	319.88 Å2

Number of
H-Bond Acceptors:	17
H-Bond Donors:	3
Rings:	3
Aromatic rings:	2
Anionic atoms:	4
Cationic atoms:	0
Rule of Five Violation:	2
Rotatable Bonds:	8

Mass center Coordinates

X	Y	Z
23.3639	-3.68277	1.54345

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
O2G	ND2	ASN- 18	2.93	169.58	H-Bond (Protein Donor)	false
N7	ND2	ASN- 18	3.26	124.76	H-Bond (Protein Donor)	false
C4'	CB	ALA- 22	3.97	0	Hydrophobic	false
C1'	CB	ALA- 22	4.41	0	Hydrophobic	false
N6	O	ILE- 183	2.87	174.09	H-Bond (Ligand Donor)	false
N1	N	ILE- 183	3.08	139.16	H-Bond (Protein Donor)	false
O2B	NZ	LYS- 192	2.73	0	Ionic (Protein Cationic)	false
N6	O	MET- 193	2.94	155.35	H-Bond (Ligand Donor)	false
O3G	OG	SER- 194	2.6	129.33	H-Bond (Protein Donor)	false
O2B	OG	SER- 194	3.37	129.71	H-Bond (Protein Donor)	false
O1G	NZ	LYS- 195	2.6	140.86	H-Bond (Protein Donor)	false
O2G	NZ	LYS- 195	2.89	137.04	H-Bond (Protein Donor)	false
O3G	N	LYS- 195	2.89	128.5	H-Bond (Protein Donor)	false
O1A	NZ	LYS- 195	2.62	127.36	H-Bond (Protein Donor)	false
O1G	NZ	LYS- 195	2.6	0	Ionic (Protein Cationic)	false
O2G	NZ	LYS- 195	2.89	0	Ionic (Protein Cationic)	false
O1A	NZ	LYS- 195	2.62	0	Ionic (Protein Cationic)	false