scPDB - 1m52 entry

Protein Data Bank Entry:

PDB ID : 1m52

Resolution :2.600 Å

Experimental Method : X-ray

Deposition Date : 2002-07-08

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Tyrosine-protein kinase ABL1
ID:	ABL1_MOUSE
AC:	P00520
Organism:	Mus musculus
Reign:	Eukaryota
TaxID:	10090
EC Number:	2.7.10.2

Chains:

Chain Name:	Percentage of Residues within binding site
B	100 %

Ligand binding site composition:

B-Factor:	29.463
Number of residues:	36
Including
Standard Amino Acids:	35
Non Standard Amino Acids:	0
Water Molecules:	1
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.435	391.500

% Hydrophobic	% Polar
75.00	25.00
According to VolSite

Ligand :

HET Code:	P17
Formula:	C21H16Cl2N4OS
Molecular weight:	443.349 g/mol
DrugBank ID:	DB02567
Buried Surface Area:	72.04 %
Polar Surface area:	83.42 Å2

Number of
H-Bond Acceptors:	5
H-Bond Donors:	1
Rings:	4
Aromatic rings:	3
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	1
Rotatable Bonds:	4

Mass center Coordinates

X	Y	Z
43.9782	79.2574	30.0153

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C5	CB	LEU- 248	4.33	0	Hydrophobic	false
C7	CD1	LEU- 248	4.09	0	Hydrophobic	false
C3	CD2	LEU- 248	3.96	0	Hydrophobic	false
C20	CD1	TYR- 253	3.42	0	Hydrophobic	false
C20	CG1	VAL- 256	4.25	0	Hydrophobic	false
CL1	CG1	VAL- 256	3.44	0	Hydrophobic	false
CL1	CB	ALA- 269	3.89	0	Hydrophobic	false
C13	CB	ALA- 269	3.58	0	Hydrophobic	false
C24	CB	LYS- 271	3.8	0	Hydrophobic	false
C25	SD	MET- 290	3.48	0	Hydrophobic	false
C27	CG1	VAL- 299	4.46	0	Hydrophobic	false
CL2	CG2	VAL- 299	3.92	0	Hydrophobic	false
C24	CG2	ILE- 313	3.62	0	Hydrophobic	false
CL1	CG2	THR- 315	4.34	0	Hydrophobic	false
C24	CG2	THR- 315	3.78	0	Hydrophobic	false
C1	CZ	PHE- 317	4.2	0	Hydrophobic	false
N9	O	MET- 318	2.75	162.67	H-Bond (Ligand Donor)	false
N11	N	MET- 318	2.85	159.17	H-Bond (Protein Donor)	false
CL2	CD2	LEU- 370	4.32	0	Hydrophobic	false
C13	CD2	LEU- 370	3.47	0	Hydrophobic	false
CL2	CB	ALA- 380	3.39	0	Hydrophobic	false
C26	CB	PHE- 382	4.13	0	Hydrophobic	false
CL2	CD2	PHE- 382	3.63	0	Hydrophobic	false