2.800 Å
X-ray
2001-11-30
Name: | Streptogramin A acetyltransferase |
---|---|
ID: | VATD_ENTFC |
AC: | P50870 |
Organism: | Enterococcus faecium |
Reign: | Bacteria |
TaxID: | 1352 |
EC Number: | 2.3.1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
D | 41 % |
E | 59 % |
B-Factor: | 22.571 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 1 |
Cofactors: | COA |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.117 | 654.750 |
% Hydrophobic | % Polar |
---|---|
50.00 | 50.00 |
According to VolSite |
HET Code: | VIR |
---|---|
Formula: | C28H35N3O7 |
Molecular weight: | 525.593 g/mol |
DrugBank ID: | DB01669 |
Buried Surface Area: | 47.2 % |
Polar Surface area: | 139.04 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 2 |
Rings: | 3 |
Aromatic rings: | 1 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 1 |
X | Y | Z |
---|---|---|
-7.49368 | -40.0861 | -27.633 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C13 | CG2 | VAL- 17 | 4.03 | 0 | Hydrophobic |
C16 | CG2 | VAL- 17 | 4.44 | 0 | Hydrophobic |
O18 | OH | TYR- 37 | 3.47 | 171.18 | H-Bond (Protein Donor) |
C21 | CE2 | TYR- 52 | 4.33 | 0 | Hydrophobic |
C3 | CE1 | TYR- 54 | 3.44 | 0 | Hydrophobic |
C31 | CG2 | ILE- 56 | 4.34 | 0 | Hydrophobic |
C35 | CD1 | ILE- 56 | 3.82 | 0 | Hydrophobic |
C31 | CD2 | LEU- 57 | 4 | 0 | Hydrophobic |
O27 | ND2 | ASN- 92 | 3.15 | 132.92 | H-Bond (Protein Donor) |
C16 | CD2 | LEU- 93 | 4.17 | 0 | Hydrophobic |
C32 | CE | MET- 102 | 3.8 | 0 | Hydrophobic |
C31 | CD1 | LEU- 108 | 4.11 | 0 | Hydrophobic |
C17 | S1P | COA- 304 | 4.08 | 0 | Hydrophobic |