1.640 Å
X-ray
1995-06-08
Name: | Serralysin |
---|---|
ID: | APRA_PSEAE |
AC: | Q03023 |
Organism: | Pseudomonas aeruginosa |
Reign: | Bacteria |
TaxID: | 208964 |
EC Number: | 3.4.24.40 |
Chain Name: | Percentage of Residues within binding site |
---|---|
P | 100 % |
B-Factor: | 23.450 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | ZN |
Ligandability | Volume (Å3) |
---|---|
0.486 | 725.625 |
% Hydrophobic | % Polar |
---|---|
34.88 | 65.12 |
According to VolSite |
HET Code: | GLY_SER_ASN_SER |
---|---|
Formula: | C12H21N5O8 |
Molecular weight: | 363.324 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 53.06 % |
Polar Surface area: | 238.61 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 7 |
Rings: | 0 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 1 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 11 |
X | Y | Z |
---|---|---|
-12.858 | 28.272 | -24.0953 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CB | CD1 | ILE- 79 | 4.44 | 0 | Hydrophobic |
N | O | ALA- 137 | 2.99 | 164.33 | H-Bond (Ligand Donor) |
O | N | ALA- 137 | 2.82 | 153.85 | H-Bond (Protein Donor) |
O | ND2 | ASN- 191 | 3.11 | 144.6 | H-Bond (Protein Donor) |
N | OD1 | ASN- 191 | 2.92 | 148.07 | H-Bond (Ligand Donor) |
CB | CB | ALA- 192 | 3.63 | 0 | Hydrophobic |
O | OH | TYR- 216 | 2.63 | 169.42 | H-Bond (Protein Donor) |
O | ZN | ZN- 613 | 2.24 | 0 | Metal Acceptor |
OXT | ZN | ZN- 613 | 2.46 | 0 | Metal Acceptor |