1.640 Å
X-ray
1995-06-08
| Name: | Serralysin |
|---|---|
| ID: | APRA_PSEAE |
| AC: | Q03023 |
| Organism: | Pseudomonas aeruginosa |
| Reign: | Bacteria |
| TaxID: | 208964 |
| EC Number: | 3.4.24.40 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| P | 100 % |
| B-Factor: | 23.450 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 28 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | ZN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.486 | 725.625 |
| % Hydrophobic | % Polar |
|---|---|
| 34.88 | 65.12 |
| According to VolSite | |

| HET Code: | GLY_SER_ASN_SER |
|---|---|
| Formula: | C12H21N5O8 |
| Molecular weight: | 363.324 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 53.06 % |
| Polar Surface area: | 238.61 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 8 |
| H-Bond Donors: | 7 |
| Rings: | 0 |
| Aromatic rings: | 0 |
| Anionic atoms: | 1 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 2 |
| Rotatable Bonds: | 11 |
| X | Y | Z |
|---|---|---|
| -12.858 | 28.272 | -24.0953 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CB | CD1 | ILE- 79 | 4.44 | 0 | Hydrophobic |
| N | O | ALA- 137 | 2.99 | 164.33 | H-Bond (Ligand Donor) |
| O | N | ALA- 137 | 2.82 | 153.85 | H-Bond (Protein Donor) |
| O | ND2 | ASN- 191 | 3.11 | 144.6 | H-Bond (Protein Donor) |
| N | OD1 | ASN- 191 | 2.92 | 148.07 | H-Bond (Ligand Donor) |
| CB | CB | ALA- 192 | 3.63 | 0 | Hydrophobic |
| O | OH | TYR- 216 | 2.63 | 169.42 | H-Bond (Protein Donor) |
| O | ZN | ZN- 613 | 2.24 | 0 | Metal Acceptor |
| OXT | ZN | ZN- 613 | 2.46 | 0 | Metal Acceptor |