2.220 Å
X-ray
2001-01-09
Name: | 3-hydroxy-3-methylglutaryl-coenzyme A reductase |
---|---|
ID: | HMDH_HUMAN |
AC: | P04035 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 1.1.1.34 |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 57.081 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 24 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.685 | 523.125 |
% Hydrophobic | % Polar |
---|---|
45.81 | 54.19 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 45.27 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
19.7207 | -9.185 | -18.1292 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C2' | CE1 | PHE- 628 | 4.49 | 0 | Hydrophobic |
N6 | OD2 | ASP- 653 | 3.36 | 143.25 | H-Bond (Ligand Donor) |
N1 | N | ASP- 653 | 2.7 | 157.73 | H-Bond (Protein Donor) |
C5' | CB | ALA- 654 | 3.85 | 0 | Hydrophobic |
O1B | N | GLY- 656 | 2.98 | 150.57 | H-Bond (Protein Donor) |
O2B | N | ASN- 658 | 3.2 | 158.46 | H-Bond (Protein Donor) |
C5' | CE | MET- 659 | 4.45 | 0 | Hydrophobic |
C3' | CE | MET- 659 | 3.97 | 0 | Hydrophobic |