scPDB - 1hw8 entry

Protein Data Bank Entry:

PDB ID : 1hw8

Resolution :2.100 Å

Experimental Method : X-ray

Deposition Date : 2001-01-09

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	3-hydroxy-3-methylglutaryl-coenzyme A reductase
ID:	HMDH_HUMAN
AC:	P04035
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	1.1.1.34

Chains:

Chain Name:	Percentage of Residues within binding site
D	100 %

Ligand binding site composition:

B-Factor:	33.681
Number of residues:	25
Including
Standard Amino Acids:	24
Non Standard Amino Acids:	0
Water Molecules:	1
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.905	995.625

% Hydrophobic	% Polar
41.02	58.98
According to VolSite

Ligand :

HET Code:	ADP
Formula:	C10H12N5O10P2
Molecular weight:	424.177 g/mol
DrugBank ID:	-
Buried Surface Area:	51.69 %
Polar Surface area:	260.7 Å2

Number of
H-Bond Acceptors:	14
H-Bond Donors:	3
Rings:	3
Aromatic rings:	2
Anionic atoms:	3
Cationic atoms:	0
Rule of Five Violation:	1
Rotatable Bonds:	6

Mass center Coordinates

X	Y	Z
49.4083	9.75022	38.5874

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C2'	CD1	PHE- 628	4	0	Hydrophobic	false
C1'	CE1	PHE- 628	4.43	0	Hydrophobic	false
DuAr	DuAr	PHE- 628	3.68	0	Aromatic Face/Face	false
N6	OD2	ASP- 653	3.1	138.84	H-Bond (Ligand Donor)	false
N1	N	ASP- 653	2.74	149.56	H-Bond (Protein Donor)	false
C5'	CB	ALA- 654	4	0	Hydrophobic	false
O3B	N	GLY- 656	3.49	157.38	H-Bond (Protein Donor)	false
O2B	N	ASN- 658	2.9	166.86	H-Bond (Protein Donor)	false
O2B	ND2	ASN- 658	3.28	127.83	H-Bond (Protein Donor)	false
O1B	N	MET- 659	3.33	166.06	H-Bond (Protein Donor)	false
C5'	CE	MET- 659	3.8	0	Hydrophobic	false
C3'	CE	MET- 659	4.22	0	Hydrophobic	false
O3B	O	HOH- 1086	2.86	151.46	H-Bond (Protein Donor)	false