2.890 Å
X-ray
2000-08-31
Name: | Glutamine synthetase |
---|---|
ID: | GLNA_SALTY |
AC: | P0A1P6 |
Organism: | Salmonella typhimurium |
Reign: | Bacteria |
TaxID: | 99287 |
EC Number: | 6.3.1.2 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 11 % |
F | 89 % |
B-Factor: | 52.776 |
---|---|
Number of residues: | 38 |
Including | |
Standard Amino Acids: | 35 |
Non Standard Amino Acids: | 3 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | MN MN |
Ligandability | Volume (Å3) |
---|---|
0.643 | 1839.375 |
% Hydrophobic | % Polar |
---|---|
42.94 | 57.06 |
According to VolSite |
HET Code: | ADP |
---|---|
Formula: | C10H12N5O10P2 |
Molecular weight: | 424.177 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 59.28 % |
Polar Surface area: | 260.7 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 14 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 3 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
-80.9641 | -33.9298 | -80.6713 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O3' | O | THR- 223 | 3 | 159.78 | H-Bond (Ligand Donor) |
C2' | CD1 | PHE- 225 | 4.14 | 0 | Hydrophobic |
C1' | CB | PHE- 225 | 4.14 | 0 | Hydrophobic |
O2' | N | PHE- 225 | 2.84 | 154.07 | H-Bond (Protein Donor) |
O4' | ND1 | HIS- 271 | 2.75 | 120.11 | H-Bond (Protein Donor) |
C1' | CB | HIS- 271 | 3.88 | 0 | Hydrophobic |
O2B | MN | MN- 470 | 2.35 | 0 | Metal Acceptor |
O3B | MN | MN- 470 | 2.58 | 0 | Metal Acceptor |