2.400 Å
X-ray
2000-07-29
| Name: | Beta-1,4-galactosyltransferase 1 |
|---|---|
| ID: | B4GT1_BOVIN |
| AC: | P08037 |
| Organism: | Bos taurus |
| Reign: | Eukaryota |
| TaxID: | 9913 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 33 % |
| B | 67 % |
| B-Factor: | 52.775 |
|---|---|
| Number of residues: | 18 |
| Including | |
| Standard Amino Acids: | 18 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.579 | 1890.000 |
| % Hydrophobic | % Polar |
|---|---|
| 38.39 | 61.61 |
| According to VolSite | |

| HET Code: | U5P |
|---|---|
| Formula: | C9H11N2O9P |
| Molecular weight: | 322.165 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 43.52 % |
| Polar Surface area: | 181.33 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 9 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 0 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| 21.9909 | 20.2834 | 36.5531 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N3 | O | ARG- 189 | 3.08 | 125.57 | H-Bond (Ligand Donor) |
| O4' | NH1 | ARG- 189 | 3.4 | 151.22 | H-Bond (Protein Donor) |
| O2P | ND2 | ASN- 190 | 2.9 | 154.59 | H-Bond (Protein Donor) |
| O5' | NH2 | ARG- 191 | 2.81 | 167.71 | H-Bond (Protein Donor) |
| O2P | NH1 | ARG- 191 | 3.28 | 177.74 | H-Bond (Protein Donor) |
| C3' | CE | MET- 225 | 4.29 | 0 | Hydrophobic |
| C1' | CB | PHE- 226 | 3.55 | 0 | Hydrophobic |
| C2' | CG2 | VAL- 287 | 4.18 | 0 | Hydrophobic |