2.400 Å
X-ray
2000-07-29
Name: | Beta-1,4-galactosyltransferase 1 |
---|---|
ID: | B4GT1_BOVIN |
AC: | P08037 |
Organism: | Bos taurus |
Reign: | Eukaryota |
TaxID: | 9913 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 33 % |
B | 67 % |
B-Factor: | 52.775 |
---|---|
Number of residues: | 18 |
Including | |
Standard Amino Acids: | 18 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.579 | 1890.000 |
% Hydrophobic | % Polar |
---|---|
38.39 | 61.61 |
According to VolSite |
HET Code: | U5P |
---|---|
Formula: | C9H11N2O9P |
Molecular weight: | 322.165 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 43.52 % |
Polar Surface area: | 181.33 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 9 |
H-Bond Donors: | 3 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
21.9909 | 20.2834 | 36.5531 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N3 | O | ARG- 189 | 3.08 | 125.57 | H-Bond (Ligand Donor) |
O4' | NH1 | ARG- 189 | 3.4 | 151.22 | H-Bond (Protein Donor) |
O2P | ND2 | ASN- 190 | 2.9 | 154.59 | H-Bond (Protein Donor) |
O5' | NH2 | ARG- 191 | 2.81 | 167.71 | H-Bond (Protein Donor) |
O2P | NH1 | ARG- 191 | 3.28 | 177.74 | H-Bond (Protein Donor) |
C3' | CE | MET- 225 | 4.29 | 0 | Hydrophobic |
C1' | CB | PHE- 226 | 3.55 | 0 | Hydrophobic |
C2' | CG2 | VAL- 287 | 4.18 | 0 | Hydrophobic |