2.200 Å
X-ray
1999-01-05
| Name: | Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase |
|---|---|
| ID: | MCE_VACCW |
| AC: | P07617 |
| Organism: | Vaccinia virus ) |
| Reign: | Viruses |
| TaxID: | 10254 |
| EC Number: | 2.1.1.57 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 23.553 |
|---|---|
| Number of residues: | 18 |
| Including | |
| Standard Amino Acids: | 17 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.835 | 320.625 |
| % Hydrophobic | % Polar |
|---|---|
| 60.00 | 40.00 |
| According to VolSite | |

| HET Code: | MG7 |
|---|---|
| Formula: | C11H16N5O5 |
| Molecular weight: | 298.275 g/mol |
| DrugBank ID: | DB03493 |
| Buried Surface Area: | 37.51 % |
| Polar Surface area: | 146.21 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 7 |
| H-Bond Donors: | 5 |
| Rings: | 3 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| 16.5256 | 11.9971 | 22.8379 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CN7 | CE1 | TYR- 22 | 4.13 | 0 | Hydrophobic |
| C4' | CB | ALA- 27 | 4.22 | 0 | Hydrophobic |
| CN7 | CZ | PHE- 180 | 4.32 | 0 | Hydrophobic |
| CN7 | CB | ALA- 206 | 4.42 | 0 | Hydrophobic |
| N1 | NE2 | GLN- 233 | 3.06 | 159.26 | H-Bond (Protein Donor) |