2.200 Å
X-ray
1999-11-29
Name: | C-1-tetrahydrofolate synthase, cytoplasmic |
---|---|
ID: | C1TC_HUMAN |
AC: | P11586 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 1.5.1.5 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 28.998 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 25 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 3 |
Cofactors: | NAP |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.821 | 769.500 |
% Hydrophobic | % Polar |
---|---|
45.61 | 54.39 |
According to VolSite |
HET Code: | L37 |
---|---|
Formula: | C17H17N7O7 |
Molecular weight: | 431.360 g/mol |
DrugBank ID: | DB02358 |
Buried Surface Area: | 44.37 % |
Polar Surface area: | 248.53 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 11 |
H-Bond Donors: | 6 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
0.473839 | 57.4302 | 20.6871 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CB | CB | PRO- 272 | 4.18 | 0 | Hydrophobic |
OXT | N | GLY- 273 | 2.7 | 138.79 | H-Bond (Protein Donor) |
C2B | CG2 | THR- 279 | 4.49 | 0 | Hydrophobic |
C3B | CG2 | VAL- 280 | 3.9 | 0 | Hydrophobic |
N9 | N7N | NAP- 2001 | 3.34 | 122.62 | H-Bond (Protein Donor) |
O | O | HOH- 4012 | 2.56 | 179.98 | H-Bond (Protein Donor) |