2.550 Å
X-ray
1998-03-23
Name: | Metallo-beta-lactamase type 2 |
---|---|
ID: | BLAB_BACFG |
AC: | P25910 |
Organism: | Bacteroides fragilis |
Reign: | Bacteria |
TaxID: | 817 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 4.704 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 27 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 0 |
Cofactors: | |
Metals: | ZN ZN |
Ligandability | Volume (Å3) |
---|---|
0.724 | 496.125 |
% Hydrophobic | % Polar |
---|---|
56.46 | 43.54 |
According to VolSite |
HET Code: | 061 |
---|---|
Formula: | C26H23N6O2 |
Molecular weight: | 451.500 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 51.48 % |
Polar Surface area: | 105.67 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 7 |
H-Bond Donors: | 1 |
Rings: | 5 |
Aromatic rings: | 4 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 7 |
X | Y | Z |
---|---|---|
7.94974 | 38.4839 | -1.14621 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C9 | CG2 | ILE- 29 | 3.34 | 0 | Hydrophobic |
C23 | CE3 | TRP- 32 | 3.78 | 0 | Hydrophobic |
C24 | CB | TRP- 32 | 4.38 | 0 | Hydrophobic |
C13 | CG1 | VAL- 35 | 3.35 | 0 | Hydrophobic |
C27 | CG | PRO- 36 | 3.88 | 0 | Hydrophobic |
O30 | OD1 | ASP- 168 | 3.5 | 168.5 | H-Bond (Ligand Donor) |
O30 | OD2 | ASP- 168 | 2.75 | 132.3 | H-Bond (Ligand Donor) |
C31 | CG2 | THR- 171 | 4.41 | 0 | Hydrophobic |
C6 | CB | ASN- 176 | 3.65 | 0 | Hydrophobic |
C17 | CB | ASN- 176 | 3.65 | 0 | Hydrophobic |
N1 | ZN | ZN- 252 | 2.36 | 0 | Metal Acceptor |
DuAr | ZN | ZN- 252 | 3.48 | 93.37 | Pi/Cation |