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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5tgzFMNCannabinoid receptor 1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5tgzFMNCannabinoid receptor 1/1.000
3f6rFMNFlavodoxin/0.526
1c7fFMNFlavodoxin/0.525
1fx1FMNFlavodoxin/0.510
1bu5RBFFlavodoxin/0.501
2fx2FMNFlavodoxin/0.500
1j9gFMNFlavodoxin/0.494
1xyyFMNFlavodoxin/0.479
5fx2FMNFlavodoxin/0.471
4fx2FMNFlavodoxin/0.469
1akwFMNFlavodoxin/0.467
1j9zFMNNADPH--cytochrome P450 reductase/0.467
1azlFMNFlavodoxin/0.466
1j8qFMNFlavodoxin/0.457
4y7cFMNNADPH--cytochrome P450 reductase/0.455
3ojxFMNNADPH--cytochrome P450 reductase/0.454
1wsbFMNFlavodoxin/0.453
1akuFMNFlavodoxin/0.452
2ed3SAHDiphthine synthase/0.440