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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5p2pDHGPhospholipase A2, major isoenzyme3.1.1.4

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5p2pDHGPhospholipase A2, major isoenzyme3.1.1.41.000
1kquBR4Phospholipase A2, membrane associated/0.480
2oliIOPBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.462
1fxfMJIPhospholipase A2, major isoenzyme3.1.1.40.448
4qemHC4Phospholipase A2 VRV-PL-VIIIa/0.442
1fx9MJIPhospholipase A2, major isoenzyme3.1.1.40.441