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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5kjePFBAlcohol dehydrogenase E chain1.1.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5kjePFBAlcohol dehydrogenase E chain1.1.1.11.000
3oq6PFBAlcohol dehydrogenase E chain1.1.1.10.772
4dwvPFBAlcohol dehydrogenase E chain1.1.1.10.748
5kcpPFBAlcohol dehydrogenase E chain1.1.1.10.700
5kj1NAJAlcohol dehydrogenase E chain1.1.1.10.695
5kj6NAJAlcohol dehydrogenase E chain1.1.1.10.676
4nfhPFBAlcohol dehydrogenase E chain1.1.1.10.661
4ng5PFBAlcohol dehydrogenase E chain1.1.1.10.660
5kj6PFBAlcohol dehydrogenase E chain1.1.1.10.657
5kj1PFBAlcohol dehydrogenase E chain1.1.1.10.649
5kjcPFBAlcohol dehydrogenase E chain1.1.1.10.646
5cdgPFBAlcohol dehydrogenase E chain1.1.1.10.644
5cdsPFBAlcohol dehydrogenase E chain1.1.1.10.641
5cdtPFBAlcohol dehydrogenase E chain1.1.1.10.635
5cdtNAJAlcohol dehydrogenase E chain1.1.1.10.589
5kcpNAJAlcohol dehydrogenase E chain1.1.1.10.581
1hetNADAlcohol dehydrogenase E chain1.1.1.10.573
5kjcNAJAlcohol dehydrogenase E chain1.1.1.10.565
5cdgNAJAlcohol dehydrogenase E chain1.1.1.10.554
5kjeNAJAlcohol dehydrogenase E chain1.1.1.10.552
3oq6NAJAlcohol dehydrogenase E chain1.1.1.10.550
4xd2NAIAlcohol dehydrogenase E chain1.1.1.10.549
1hf3NADAlcohol dehydrogenase E chain1.1.1.10.521
1heuNADAlcohol dehydrogenase E chain1.1.1.10.508
6adhNADAlcohol dehydrogenase E chain1.1.1.10.448
1p0fNAPNADP-dependent alcohol dehydrogenase1.1.1.20.440