Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5jscFADPutative acyl-CoA dehydrogenase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5jscFADPutative acyl-CoA dehydrogenase/1.000
3pfdFDAAcyl-CoA dehydrogenase FadE25/0.477
3nf4FADAcyl-CoA dehydrogenase domain-containing protein/0.473
1udyFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.471
2z1qFADAcyl-CoA dehydrogenase/0.463
1rx0FADIsobutyryl-CoA dehydrogenase, mitochondrial1.3.990.461
1egdFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.451
1egeFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.449
3owaFADAcyl-CoA dehydrogenase/0.445
2ebaFADPutative glutaryl-CoA dehydrogenase/0.443