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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5jjrSAHGenome polyprotein

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5jjrSAHGenome polyprotein/1.000
5jjsSAHGenome polyprotein/0.650
3evcSAHGenome polyprotein2.1.1.560.588
4ctkSAMGenome polyprotein/0.579
4ctjSAMGenome polyprotein/0.556
3elySAHMethyltransferase/0.544
3p8z36AGenome polyprotein2.1.1.560.542
3p97SAMGenome polyprotein2.1.1.560.530
4k6mSAHGenome polyprotein/0.530
2p41SAHGenome polyprotein/0.528
3p8zSAHGenome polyprotein2.1.1.560.526
2px2SAHGenome polyprotein2.7.7.480.522
3eldSFGMethyltransferase/0.512
2pxaSAHGenome polyprotein2.7.7.480.508
2px5SAHGenome polyprotein2.7.7.480.502
3eluSAMMethyltransferase/0.497
2xbmSAHGenome polyprotein/0.492
2wa2SAMGenome polyprotein/0.454
3lkzSFGGenome polyprotein/0.445