sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
5hhf	FDA	UDP-galactopyranose mutase

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
5hhf	FDA	UDP-galactopyranose mutase	/	1.000
4u8k	FDA	UDP-galactopyranose mutase	/	0.582
4gdd	FAD	UDP-galactopyranose mutase	/	0.573
3uth	FDA	UDP-galactopyranose mutase	/	0.570
3utg	FDA	UDP-galactopyranose mutase	/	0.560
4gde	FDA	UDP-galactopyranose mutase	/	0.536
4wx1	FDA	UDP-galactopyranose mutase	/	0.524
4u8l	FDA	UDP-galactopyranose mutase	/	0.522
3utf	FDA	UDP-galactopyranose mutase	/	0.513
4u8p	FDA	UDP-galactopyranose mutase	/	0.499
4u8m	FDA	UDP-galactopyranose mutase	/	0.492
3uka	FAD	UDP-galactopyranose mutase	/	0.491
3ute	FAD	UDP-galactopyranose mutase	/	0.470
3ukl	FAD	UDP-galactopyranose mutase	/	0.466
4u8j	FDA	UDP-galactopyranose mutase	/	0.464