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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5g53NECAdenosine receptor A2a

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5g53NECAdenosine receptor A2a/1.000
2ydvNECAdenosine receptor A2a/0.509
5k2dZMAAdenosine receptor A2a/0.482
5k2bZMAAdenosine receptor A2a/0.469
5uviZMAAdenosine receptor A2a/0.466
2ydoADNAdenosine receptor A2a/0.463
5k2cZMAAdenosine receptor A2a/0.457
5jtbZMAAdenosine receptor A2a/0.453
4uhrNGIAdenosine receptor A2a/0.449
4ug2NGIAdenosine receptor A2a/0.447
3emlZMAAdenosine receptor A2a/0.441