sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 5eq1 | BEA | Peregrin |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 5eq1 | BEA | Peregrin | / | 1.000 | |
| 5fe1 | 12Q | Histone acetyltransferase KAT2B | 2.3.1.48 | 0.483 | |
| 5bt5 | 2LO | Bromodomain-containing protein 2 | / | 0.477 | |
| 4c67 | L5S | Bromodomain-containing protein 4 | / | 0.472 | |
| 4gpj | 0Q1 | Bromodomain-containing protein 4 | / | 0.466 | |
| 1po7 | TZD | Benzoylformate decarboxylase | 4.1.1.7 | 0.463 | |
| 1ie9 | VDX | Vitamin D3 receptor | / | 0.462 | |
| 3w8d | NAD | 3-hydroxybutyrate dehydrogenase | / | 0.459 | |
| 2b37 | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | 1.3.1.9 | 0.458 | |
| 4hki | FLN | Tankyrase-2 | 2.4.2.30 | 0.457 | |
| 1dr3 | TAP | Dihydrofolate reductase | 1.5.1.3 | 0.456 | |
| 1dr2 | TAP | Dihydrofolate reductase | 1.5.1.3 | 0.455 | |
| 1pd9 | CO4 | Dihydrofolate reductase | 1.5.1.3 | 0.455 | |
| 4j1p | 1K0 | Bromodomain-containing protein 2 | / | 0.454 | |
| 4mpr | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.454 | |
| 2vte | IK4 | UDP-N-acetylmuramoylalanine--D-glutamate ligase | 6.3.2.9 | 0.453 | |
| 3l3l | L3L | Poly [ADP-ribose] polymerase 1 | 2.4.2.30 | 0.452 | |
| 2zba | ZBA | Trichothecene 3-O-acetyltransferase | / | 0.451 | |
| 1dr3 | HBI | Dihydrofolate reductase | 1.5.1.3 | 0.450 | |
| 1pkf | EPD | Epothilone C/D epoxidase | 1.14 | 0.450 | |
| 3reo | EUG | (Iso)eugenol O-methyltransferase | 2.1.1.146 | 0.449 | |
| 3vt6 | 5YI | Vitamin D3 receptor | / | 0.448 | |
| 3e01 | PZ2 | Gag-Pol polyprotein | 2.7.7.49 | 0.446 | |
| 4hlm | 16S | Tankyrase-2 | 2.4.2.30 | 0.446 | |
| 4lnb | ED5 | CaaX farnesyltransferase beta subunit Ram1 | / | 0.446 | |
| 1uxn | NAP | NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase | / | 0.445 | |
| 4gm4 | TZD | Benzoylformate decarboxylase | 4.1.1.7 | 0.445 | |
| 4l32 | 1VF | Tankyrase-2 | 2.4.2.30 | 0.445 | |
| 4i42 | 1HA | 1,4-dihydroxy-2-naphthoyl-CoA synthase | / | 0.444 | |
| 1dr5 | NAP | Dihydrofolate reductase | 1.5.1.3 | 0.443 | |
| 2ilt | NN1 | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.443 | |
| 3oaf | OAG | Dihydrofolate reductase | 1.5.1.3 | 0.443 | |
| 4gg1 | TZD | Benzoylformate decarboxylase | 4.1.1.7 | 0.443 | |
| 4g95 | OAG | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 4l33 | F70 | Tankyrase-2 | 2.4.2.30 | 0.441 | |
| 5cb3 | APR | O-acetyl-ADP-ribose deacetylase | / | 0.441 | |
| 1db1 | VDX | Vitamin D3 receptor | / | 0.440 | |
| 4r1l | ADP | Phenylacetate-coenzyme A ligase | / | 0.440 |