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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5ap7SVEDual specificity protein kinase TTK2.7.12.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5ap7SVEDual specificity protein kinase TTK2.7.12.11.000
4c4f7CEDual specificity protein kinase TTK2.7.12.10.496
4bi0Z0WDual specificity protein kinase TTK2.7.12.10.465
4c4iX20Dual specificity protein kinase TTK2.7.12.10.451