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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5ag5MYAGlycylpeptide N-tetradecanoyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5ag5MYAGlycylpeptide N-tetradecanoyltransferase/1.000
5ag7MYAGlycylpeptide N-tetradecanoyltransferase/0.807
4a30MYAGlycylpeptide N-tetradecanoyltransferase/0.766
4a32MYAGlycylpeptide N-tetradecanoyltransferase/0.716
5ag6MYAGlycylpeptide N-tetradecanoyltransferase/0.655
4cgpMYAGlycylpeptide N-tetradecanoyltransferase/0.649
4a2zMYAGlycylpeptide N-tetradecanoyltransferase/0.644
4b14NHWGlycylpeptide N-tetradecanoyltransferase/0.577
4b12NHWGlycylpeptide N-tetradecanoyltransferase/0.575
4b10NHWGlycylpeptide N-tetradecanoyltransferase/0.569
5a27MYAGlycylpeptide N-tetradecanoyltransferase/0.561
2yneNHWGlycylpeptide N-tetradecanoyltransferase/0.556
4b13NHWGlycylpeptide N-tetradecanoyltransferase/0.496
4c2xNHWGlycylpeptide N-tetradecanoyltransferase 2/0.492
4a33MYAGlycylpeptide N-tetradecanoyltransferase/0.470
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.451
2nmtNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.450
4a31MYAGlycylpeptide N-tetradecanoyltransferase/0.450