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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5a27MYAGlycylpeptide N-tetradecanoyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
5a27MYAGlycylpeptide N-tetradecanoyltransferase/1.000
4a32MYAGlycylpeptide N-tetradecanoyltransferase/0.671
4cgpMYAGlycylpeptide N-tetradecanoyltransferase/0.670
4a30MYAGlycylpeptide N-tetradecanoyltransferase/0.657
5ag7MYAGlycylpeptide N-tetradecanoyltransferase/0.643
4a2zMYAGlycylpeptide N-tetradecanoyltransferase/0.633
4b14NHWGlycylpeptide N-tetradecanoyltransferase/0.597
4b12NHWGlycylpeptide N-tetradecanoyltransferase/0.592
2yneNHWGlycylpeptide N-tetradecanoyltransferase/0.590
4b10NHWGlycylpeptide N-tetradecanoyltransferase/0.579
4b13NHWGlycylpeptide N-tetradecanoyltransferase/0.560
5ag6MYAGlycylpeptide N-tetradecanoyltransferase/0.542
4c2xNHWGlycylpeptide N-tetradecanoyltransferase 2/0.540
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.509
4a33MYAGlycylpeptide N-tetradecanoyltransferase/0.507
4a95NHWGlycylpeptide N-tetradecanoyltransferase/0.495
5ag5MYAGlycylpeptide N-tetradecanoyltransferase/0.489
2nmtNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.481