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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4z9rFMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4z9rFMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD/1.000
1lm1FMNFerredoxin-dependent glutamate synthase 21.4.7.10.456
1ofeFMNFerredoxin-dependent glutamate synthase 21.4.7.10.456
4iqlFMNEnoyl-(Acyl-carrier-protein) reductase II/0.455
2x8iX8ISerine/threonine-protein kinase Chk12.7.11.10.453
3bbrBHYGlutamate receptor 2/0.452
4eplJAIJasmonic acid-amido synthetase JAR16.3.20.443
2e9v85ASerine/threonine-protein kinase Chk12.7.11.10.441
4rrrA3TThreonine--tRNA ligase6.1.1.30.441
1zxmANPDNA topoisomerase 2-alpha5.99.1.30.440
3pmy41LEndothiapepsin3.4.23.220.440
3zonIK1Non-receptor tyrosine-protein kinase TYK22.7.10.20.440
4fv4EK7Mitogen-activated protein kinase 12.7.11.240.440