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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4yjdFADD-amino-acid oxidase1.4.3.3

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4yjdFADD-amino-acid oxidase1.4.3.31.000
1kifFADD-amino-acid oxidase1.4.3.30.538
1ve9FADD-amino-acid oxidase1.4.3.30.531
2du8FADD-amino-acid oxidase1.4.3.30.514
2e48FADD-amino-acid oxidase1.4.3.30.499
3axbFADPutative oxidoreductase/0.493
3vqrFADPutative oxidoreductase/0.457
3if9FADGlycine oxidase1.4.3.190.450
4yshFADGlycine oxidase/0.447