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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4xxgFADCholesterol oxidase1.1.3.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4xxgFADCholesterol oxidase1.1.3.61.000
4xwrFADCholesterol oxidase1.1.3.60.912
1n4uFAECholesterol oxidase1.1.3.60.836
4rekFADCholesterol oxidase1.1.3.60.824
4u2lSFDCholesterol oxidase1.1.3.60.804
1b8sFADCholesterol oxidase1.1.3.60.800
1ijhFADCholesterol oxidase1.1.3.60.795
3gyiFADCholesterol oxidase1.1.3.60.765
3gyjFADCholesterol oxidase1.1.3.60.764
1b4vFADCholesterol oxidase1.1.3.60.727
1n4vFADCholesterol oxidase1.1.3.60.726
1cboFADCholesterol oxidase1.1.3.60.691
1n4wFADCholesterol oxidase1.1.3.60.681
3b6dFAECholesterol oxidase1.1.3.60.667
1n1pFADCholesterol oxidase1.1.3.60.642
4u2sFDACholesterol oxidase1.1.3.60.638
3cnjFADCholesterol oxidase1.1.3.60.635
1cc2FADCholesterol oxidase1.1.3.60.617
4u2tFADCholesterol oxidase1.1.3.60.502
2gewFADCholesterol oxidase1.1.3.60.484
3coxFADCholesterol oxidase1.1.3.60.468