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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4u2tFADCholesterol oxidase1.1.3.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4u2tFADCholesterol oxidase1.1.3.61.000
3gyjFADCholesterol oxidase1.1.3.60.777
4xwrFADCholesterol oxidase1.1.3.60.773
1b4vFADCholesterol oxidase1.1.3.60.747
3b6dFAECholesterol oxidase1.1.3.60.744
1ijhFADCholesterol oxidase1.1.3.60.742
4xxgFADCholesterol oxidase1.1.3.60.725
1n4wFADCholesterol oxidase1.1.3.60.707
1n4vFADCholesterol oxidase1.1.3.60.705
1n1pFADCholesterol oxidase1.1.3.60.693
1cboFADCholesterol oxidase1.1.3.60.691
4rekFADCholesterol oxidase1.1.3.60.684
1b8sFADCholesterol oxidase1.1.3.60.675
2gewFADCholesterol oxidase1.1.3.60.667
3gyiFADCholesterol oxidase1.1.3.60.630
3cnjFADCholesterol oxidase1.1.3.60.624
3coxFADCholesterol oxidase1.1.3.60.513