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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rw4494Gag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4rw4494Gag-Pol polyprotein2.7.7.491.000
4rw6494Gag-Pol polyprotein2.7.7.490.718
4h4o506Gag-Pol polyprotein2.7.7.490.615
4h4m494Gag-Pol polyprotein2.7.7.490.584
3dyaPZLGag-Pol polyprotein2.7.7.490.579
3c6tM14Gag-Pol polyprotein2.7.7.490.578
3t1a5MAGag-Pol polyprotein2.7.7.490.570
3c6uM22Gag-Pol polyprotein2.7.7.490.566
3dokGWJPol protein/0.566
2wonZZEGag-Pol polyprotein2.7.7.490.559
2be2R22Gag-Pol polyprotein2.7.7.490.557
3drpR8EGag-Pol polyprotein2.7.7.490.536
3dmjGWEPol protein/0.533
3drrR8EGag-Pol polyprotein2.7.7.490.530
3lakKR1Gag-Pol polyprotein2.7.7.490.527
2b5j3ACGag-Pol polyprotein2.7.7.490.521
4mfb29TGag-Pol polyprotein2.7.7.490.517
3t195MAGag-Pol polyprotein2.7.7.490.515
3tamM06Gag-Pol polyprotein2.7.7.490.515
2ynfWHUGag-Pol polyprotein2.7.7.490.500
3lalKRVGag-Pol polyprotein2.7.7.490.494
3dlgGWEGag-Pol polyprotein2.7.7.490.492
4lsl1YQGag-Pol polyprotein2.7.7.490.490
4i2pG73Gag-Pol polyprotein2.7.7.490.487
3dleGFAGag-Pol polyprotein2.7.7.490.486
2ynhEURGag-Pol polyprotein2.7.7.490.478
1rt1MKCGag-Pol polyprotein2.7.7.490.472
1c1c612Gag-Pol polyprotein2.7.7.490.467
1jlaTNKGag-Pol polyprotein2.7.7.490.459
3wmxNADNAD dependent epimerase/dehydratase/0.451
3dolGWIPol protein/0.443