sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4rtr	SAM	DNA adenine methylase	2.1.1.72

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
4rtr	SAM	DNA adenine methylase	2.1.1.72	1.000
4gol	SA8	DNA adenine methylase	2.1.1.72	0.586
2ore	SAH	DNA adenine methylase	2.1.1.72	0.562
4rtn	SAH	DNA adenine methylase	2.1.1.72	0.517
4gbe	SAH	DNA adenine methylase	2.1.1.72	0.514
2g1p	SAH	DNA adenine methylase	2.1.1.72	0.495
4rtm	SAM	DNA adenine methylase	2.1.1.72	0.485
4rtp	SAM	DNA adenine methylase	2.1.1.72	0.483
4rtk	SAH	DNA adenine methylase	2.1.1.72	0.475
4rts	SAM	DNA adenine methylase	2.1.1.72	0.467
4rtl	SFG	DNA adenine methylase	2.1.1.72	0.459
4rtq	SAH	DNA adenine methylase	2.1.1.72	0.458