sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4rtk	SAH	DNA adenine methylase	2.1.1.72

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
4rtk	SAH	DNA adenine methylase	2.1.1.72	1.000
4rtm	SAM	DNA adenine methylase	2.1.1.72	0.751
4rtj	SFG	DNA adenine methylase	2.1.1.72	0.659
4rts	SAM	DNA adenine methylase	2.1.1.72	0.651
2g1p	SAH	DNA adenine methylase	2.1.1.72	0.644
4gbe	SAH	DNA adenine methylase	2.1.1.72	0.627
4rtr	SAM	DNA adenine methylase	2.1.1.72	0.612
4rtn	SAH	DNA adenine methylase	2.1.1.72	0.583
2ore	SAH	DNA adenine methylase	2.1.1.72	0.581
4gol	SA8	DNA adenine methylase	2.1.1.72	0.575
4rtp	SAM	DNA adenine methylase	2.1.1.72	0.569
4rtl	SFG	DNA adenine methylase	2.1.1.72	0.558
4rto	SFG	DNA adenine methylase	2.1.1.72	0.544
2dpm	SAM	Modification methylase DpnIIA	2.1.1.72	0.521
4rtq	SAH	DNA adenine methylase	2.1.1.72	0.500