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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4relKMPGlycosyltransferase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4relKMPGlycosyltransferase/1.000
2c1zKMPAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.485
2c9zQUEAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.485
2c1zU2FAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.481
3hbfMYCFlavonoid 3-O-glucosyltransferase2.4.10.481
3uicNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.447