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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4qbiAP5Adenylate kinase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4qbiAP5Adenylate kinase/1.000
4qbhAP5Adenylate kinase/0.572
4jloADPAdenylate kinase/0.569
3hpqAP5Adenylate kinase/0.565
2oo7AP5Adenylate kinase/0.562
4jl6ADPAdenylate kinase/0.559
2eu8AP5Adenylate kinase/0.558
3dkvAP5Adenylate kinase/0.557
4mkgAP5Adenylate kinase/0.556
4jl5ADPAdenylate kinase/0.542
1ankANPAdenylate kinase/0.541
1akeAP5Adenylate kinase/0.537
2osbAP5Adenylate kinase/0.537
4cf7ADPAdenylate kinase/0.532
4ikeADPAdenylate kinase/0.525
4jkyADPAdenylate kinase/0.523
4nu0AP5Adenylate kinase/0.512
3hprAP5Adenylate kinase/0.501
3tlxADPAdenylate kinase 2/0.496
1p3jAP5Adenylate kinase/0.493
1zioAP5Adenylate kinase/0.492
4mkhAP5Adenylate kinase/0.476
2rgxAP5Adenylate kinase/0.470
4x8oAP5Adenylate kinase/0.467
2eckADPAdenylate kinase/0.465
4qbfAP5Adenylate kinase/0.464
2akyAP5Adenylate kinase/0.450
4x8lAP5Adenylate kinase/0.450
4tyqAP5Adenylate kinase/0.446