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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4qa0SHHHistone deacetylase 83.5.1.98

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4qa0SHHHistone deacetylase 83.5.1.981.000
4qa1B3NHistone deacetylase 83.5.1.980.587
4qa2SHHHistone deacetylase 83.5.1.980.551
3ezpB3NHistone deacetylase 83.5.1.980.545
5dc5B3NHistone deacetylase 83.5.1.980.534
5d1bTSNHistone deacetylase 83.5.1.980.519
2v5xV5XHistone deacetylase 83.5.1.980.454