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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.291.000
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.578
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.550
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.546
2potGUNQueuine tRNA-ribosyltransferase2.4.2.290.541
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.533
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.517
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.516
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.513
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.508
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.507
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.506
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.504
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.504
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.501
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.500
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.495
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.492
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.488
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.486
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.486
1n2vBDIQueuine tRNA-ribosyltransferase2.4.2.290.483
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.481
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.477
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.476
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.475
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.470
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.470
4hvxQEIQueuine tRNA-ribosyltransferase2.4.2.290.469
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.451
4zqcF6FTryptophan synthase alpha chain/0.449
1q65BHBQueuine tRNA-ribosyltransferase2.4.2.290.448
4h7zGUNQueuine tRNA-ribosyltransferase2.4.2.290.447
5ero210Fusicoccadiene synthase2.5.1.290.447
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.445
2pwuGUNQueuine tRNA-ribosyltransferase2.4.2.290.444
2j2pSC2Ficolin-2/0.443
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.443
3gmd2M3Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.441