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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ot2NPSSerum albumin

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4ot2NPSSerum albumin/1.000
2bxgIBPSerum albumin/0.603
4zbrNPSSerum albumin/0.583
1mb9ATPCarboxyethyl-arginine beta-lactam-synthase6.3.3.40.451
2zb3NDPProstaglandin reductase 21.3.1.480.443
3uzp0CKCasein kinase I isoform delta2.7.11.10.443