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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4oex5EOcGMP-specific 3',5'-cyclic phosphodiesterase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4oex5EOcGMP-specific 3',5'-cyclic phosphodiesterase/1.000
4ia05BBcGMP-specific 3',5'-cyclic phosphodiesterase/0.588
4g2wNI0cGMP-specific 3',5'-cyclic phosphodiesterase/0.565
4oew5IOcGMP-specific 3',5'-cyclic phosphodiesterase/0.562
2h42VIAcGMP-specific 3',5'-cyclic phosphodiesterase/0.540
4g2yNI5cGMP-specific 3',5'-cyclic phosphodiesterase/0.539
1udtVIAcGMP-specific 3',5'-cyclic phosphodiesterase/0.533
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.498
4i9z5BAcGMP-specific 3',5'-cyclic phosphodiesterase/0.483
1rkpIBMcGMP-specific 3',5'-cyclic phosphodiesterase/0.458
2h447CAcGMP-specific 3',5'-cyclic phosphodiesterase/0.456
3bjcWANcGMP-specific 3',5'-cyclic phosphodiesterase/0.450