sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4oad	CLM	Uncharacterized protein

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
4oad	CLM	Uncharacterized protein	/	1.000
4oae	CLM	Uncharacterized protein	/	0.732
4kov	KOV	Uncharacterized protein	/	0.643
4kos	4KO	Uncharacterized protein	/	0.611
4koy	CSC	Uncharacterized protein	/	0.571
3pgp	ACO	Uncharacterized protein	/	0.570
4kub	COA	Uncharacterized protein	/	0.567
4kow	CFX	Uncharacterized protein	/	0.525
4klv	KLV	Uncharacterized protein	/	0.491
2ge3	ACO	Probable acetyltransferase	/	0.469
3zw9	NAD	Peroxisomal bifunctional enzyme	1.1.1.35	0.452
4lx9	ACO	N-alpha-acetyltransferase	2.3.1	0.440