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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4o1bDGBNicotinamide phosphoribosyltransferase2.4.2.12

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4o1bDGBNicotinamide phosphoribosyltransferase2.4.2.121.000
4ltsLTSNicotinamide phosphoribosyltransferase2.4.2.120.621
4kfn1QRNicotinamide phosphoribosyltransferase2.4.2.120.585
4kfo1QSNicotinamide phosphoribosyltransferase2.4.2.120.584
4o281QSNicotinamide phosphoribosyltransferase2.4.2.120.584
4jnm1LJNicotinamide phosphoribosyltransferase2.4.2.120.568
4o1dDGBNicotinamide phosphoribosyltransferase2.4.2.120.529
4kfp1R7Nicotinamide phosphoribosyltransferase2.4.2.120.517
4m6q20TNicotinamide phosphoribosyltransferase2.4.2.120.486
4m6p20RNicotinamide phosphoribosyltransferase2.4.2.120.479
4lwwLWWNicotinamide phosphoribosyltransferase2.4.2.120.476
4lvb20NNicotinamide phosphoribosyltransferase2.4.2.120.470
4jr51LSNicotinamide phosphoribosyltransferase2.4.2.120.468
3g8eIS1Nicotinamide phosphoribosyltransferase2.4.2.120.463
4lvg20ONicotinamide phosphoribosyltransferase2.4.2.120.462
4lva20MNicotinamide phosphoribosyltransferase2.4.2.120.448